guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 34ea230a7ef273ba1cd3bed0e23779697e3537d8
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Jul 14 10:24:36 2026 +0100
gnu: python-circe: Update to 0.4.0.
* gnu/packages/bioinformatics.scm (python-circe): Update to 0.4.0.
[phases]{relax-requirements}: New phase.
[inputs]: Remove python-numpy-1.
[propagated-inputs]: Add python-numpy and python-pybiomart.
Relates-to: guix/guix#6610
---
gnu/packages/bioinformatics.scm | 16 +++++++++++-----
1 file changed, 11 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4468617fa8..e11f8a1fc2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5071,7 +5071,7 @@ compressed files.")
(define-public python-circe
(package
(name "python-circe")
- (version "0.3.9")
+ (version "0.4.0")
(source
(origin
(method git-fetch)
@@ -5080,7 +5080,7 @@ compressed files.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0psqfkxjvfj3h23xmski0c2h8dx118zr4xshz2dbk2i3hk50ljvr"))))
+ (base32 "0im5h9a759v1mh8a9mz12bn7r1qb9dyds1qcr3q04w71y1jwl1rz"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -5090,6 +5090,10 @@ compressed files.")
#~(list
"--deselect=tests/test_network/test_network.py::test_network_atac")
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "pyproject.toml"
+ (("'cmake',") ""))))
;; Numba needs a writable dir to cache functions.
(add-before 'build 'set-numba-cache-dir
(lambda _ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
@@ -5100,18 +5104,20 @@ compressed files.")
python-setuptools))
(inputs
(list lapack
- openblas
- python-numpy-1)) ;avoid propagating @1 to user profile
+ openblas))
(propagated-inputs
(list python-anndata
python-attrs
python-dask
python-distributed
python-joblib
+ python-numpy
python-pandas
python-rich
python-scanpy
- python-scikit-learn))
+ python-scikit-learn
+ ;; [optinal]
+ python-pybiomart))
(home-page "https://github.com/cantinilab/circe";)
(synopsis "Cis-regulatory interactions between chromatin regions")
(description "Circe is a Python package for inferring co-accessibility
