guix_mirror_bot pushed a commit to branch astro-update
in repository guix.
commit 0a8cf5b7b38abceff99e9fd2093bbe1ec67a4a0a
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Jul 10 23:02:44 2026 +0100
gnu: python-stdatamodels: Update to 6.0.0.
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 6.0.0.
[source]: Switch to git-fetch.
[arguments] <#:test-flags>: Run more tests.
[phases]{patch-manifest.in}: New phase.
---
gnu/packages/astronomy.scm | 41 ++++++++++++++++++++++++-----------------
1 file changed, 24 insertions(+), 17 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6251e59f8b..afed520d10 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -11242,33 +11242,40 @@ and CAS statistics), as well as fitting 2D Sérsic
profiles.")
(define-public python-stdatamodels
(package
(name "python-stdatamodels")
- (version "5.0.2")
+ (version "6.0.0")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "stdatamodels" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spacetelescope/stdatamodels";)
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
- (base32 "1pzsk3ahc9qm08a0jyhc506m35vahc87vflz1y2wd87qahkh3yxz"))))
+ (base32 "1d4iml3v20aba5fcicnd1dw6s028bbqxx4isfpjvksq5mq52l53i"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 1878 passed
+ ;; tests: 1966 passed, 4 xfailed
#:test-flags
#~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
- "-k" (string-append
- ;; Disable tests requiring access to CRDS servers to
- ;; download ~500MiB of data.
- "not test_crds_selectors_vs_datamodel and not test_report"
- ;; XXX: Might be Astropy 8 incompatibility:
- ;; astropy.utils.exceptions.AstropyUserWarning: Column
- ;; 'FLAG' contains NULL (undefined) values which will be
- ;; converted to False. To preserve NULL information,
- ;; reopen the file with logical_as_bytes=True and check
- ;; for bytes values of b'\x00' (NULL), b'T' (True), and
- ;; b'F' (False).
- " and not test_amioi_model_"))
+ ;; Disable tests requiring access to CRDS servers to download
+ ;; ~500MiB of data.
+ (string-append "--deselect=tests/jwst/datamodels/"
+ "test_schema_against_crds.py"
+ "::test_crds_selectors_vs_datamodel"))
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-manifest.in
+ ;; See: <https://codeberg.org/guix/guix/issues/4393>.
+ (lambda* (#:key name source inputs #:allow-other-keys)
+ (let ((port (open-file "MANIFEST.in" "w")))
+ (for-each
+ (lambda (file)
+ (display "include " port)
+ (display file port)
+ (display "\n" port))
+ (find-files "."))
+ (close port))))
(add-before 'check 'set-home
(lambda _
(setenv "HOME" "/tmp"))))))
