guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 631fd912f1a7bd85a30e7c5083579b1c949d2e8a
Author: Nicolas Graves <[email protected]>
AuthorDate: Tue Aug 18 13:06:12 2026 +0200
gnu: snakemake: Improve dependents bootstrap.
* gnu/packages/python-science.scm
(python-snakemake-interface-logger-plugins-bootstrap): Add package.
(python-snakemake-logger-plugin-rich-bootstrap): Likewise.
(python-snakemake-interface-logger-plugins)[native-inputs]: Replace
python-snakemake-logger-plugin-rich by
python-snakemake-logger-plugin-rich-bootstrap.
(python-snakemake-logger-plugin-rich)[propagated-inputs]: Replace
python-snakemake-interface-logger-plugins-bootstrap by
python-snakemake-interface-logger-plugins.
[native-inputs]: Remove unused python-pytest.
Merges: guix/guix!10625
Reviewed-by: Hugo Buddelmeijer <[email protected]>
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/python-science.scm | 24 +++++++++++++++++-------
1 file changed, 17 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index d9ade7a7db..32d3568c27 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -5858,7 +5858,7 @@ its executor plugins.")
(propagated-inputs (list python-snakemake-interface-common))
(native-inputs
(list python-hatchling
- python-snakemake-logger-plugin-rich
+ python-snakemake-logger-plugin-rich-bootstrap
python-pytest))
(home-page (string-append "https://github.com/snakemake/";
"python-snakemake-interface-logger-plugins"))
@@ -5868,6 +5868,12 @@ its executor plugins.")
its logger plugins.")
(license license:expat)))
+(define-public python-snakemake-interface-logger-plugins-bootstrap
+ (package/inherit python-snakemake-interface-logger-plugins
+ (name "python-snakemake-interface-logger-plugins-bootstrap")
+ (arguments (list #:tests? #f))
+ (native-inputs (list python-hatchling))))
+
(define-public python-snakemake-interface-report-plugins
(package
(name "python-snakemake-interface-report-plugins")
@@ -6027,13 +6033,9 @@ Snakemake and its storage plugins.")
(list python-pydantic
python-rich
python-snakemake-interface-executor-plugins
- (package/inherit python-snakemake-interface-logger-plugins
- (name "python-snakemake-interface-logger-plugins-bootstrap")
- (arguments (list #:tests? #f))
- (native-inputs (list python-hatchling)))))
+ python-snakemake-interface-logger-plugins))
(native-inputs
- (list python-hatchling
- python-pytest))
+ (list python-hatchling))
(home-page "https://github.com/cademirch/snakemake-logger-plugin-rich";)
(synopsis "Log plugin for snakemake using Rich")
(description "This package provides a logging plugin for Snakemake
@@ -6041,6 +6043,14 @@ that utilizes @code{python-rich} for enhanced terminal
styling and
progress bars.")
(license license:expat)))
+(define-public python-snakemake-logger-plugin-rich-bootstrap
+ (package/inherit python-snakemake-logger-plugin-rich
+ (name "python-snakemake-logger-plugin-rich-bootstrap")
+ (propagated-inputs
+ (modify-inputs propagated-inputs
+ (replace "python-snakemake-interface-logger-plugins"
+ python-snakemake-interface-logger-plugins-bootstrap)))))
+
(define-public python-snakemake-software-deployment-plugin-container
(package
(name "python-snakemake-software-deployment-plugin-container")
