guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 0b74289fd6859c30962b03bd7e3ac3a5f8762f1e
Author: Nicolas Graves <[email protected]>
AuthorDate: Mon Aug 17 21:12:15 2026 +0200
gnu: python-snakemake-interface-common: Update to 1.23.0-0.d585b5c.
* gnu/packages/python-science.scm (python-snakemake-interface-common):
Update to 1.23.0-0.d585b5c.
[arguments]{phases}: Replace them with {test-backend, test-flags}.
[propagated-inputs]: Add python-packaging.
[native-inputs]: Replace python-poetry-core by python-setuptools.
Relates-to: guix/guix!10625
Reviewed-by: Hugo Buddelmeijer <[email protected]>
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/python-science.scm | 31 +++++++++++++++++++------------
1 file changed, 19 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index ead1b29fcb..28f13268b7 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -5774,26 +5774,33 @@ SLURM jobs (meant for internal use by
python-snakemake-executor-plugin-slurm).")
(define-public python-snakemake-interface-common
(package
(name "python-snakemake-interface-common")
- (version "1.17.4")
+ ;; This commit fixes a python-packaging sanity-check failure.
+ (properties '((commit . "d585b5c0c7c0ec0df60a1a26d5d413f3ee88e63f")
+ (revision . "0")))
+ (version (git-version "1.23.0"
+ (assoc-ref properties 'revision)
+ (assoc-ref properties 'commit)))
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/snakemake/snakemake-interface-common";)
- (commit (string-append "v" version))))
+ (url "https://github.com/snakemake/snakemake-interface-common";)
+ (commit (assoc-ref properties 'commit))))
(file-name (git-file-name name version))
(sha256
- (base32 "19fyqs048zdvrmq5sdayzch850kwsyv2x6xn57cjjzcm4zpjrh9w"))))
+ (base32 "1zxks3jjwc5addx5wxgfb5zn2y2jzxz53n739b9w8qba3nwnzyj2"))))
(build-system pyproject-build-system)
(arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python3" "tests/tests.py")))))))
- (native-inputs (list python-poetry-core python-pytest))
- (propagated-inputs (list python-argparse-dataclass python-configargparse))
+ (list
+ #:test-backend #~'custom
+ #:test-flags #~(list "tests/tests.py")))
+ (propagated-inputs
+ (list python-argparse-dataclass
+ python-configargparse
+ python-packaging))
+ (native-inputs
+ (list python-pytest
+ python-setuptools))
(home-page "https://github.com/snakemake/snakemake-interface-common";)
(synopsis "Common functions and classes for Snakemake and its plugins")
(description "This package provides common functions and classes
