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new b4646df734 gnu: Remove express-beta-diversity.
b4646df734 is described below
commit b4646df734e70ff0c2bd5a0cc98b4b0769ca087d
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Aug 18 19:07:26 2026 +0100
gnu: Remove express-beta-diversity.
Requires Python 2, unmaintained since 2022.
See: <https://github.com/donovan-h-parks/ExpressBetaDiversity/issues/14>.
* gnu/packages/bioinformatics.scm (express-beta-diversity): Delete variable.
Merges: guix/guix!10648
---
gnu/packages/bioinformatics.scm | 41 -----------------------------------------
1 file changed, 41 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 47144a8cd4..54cc51ce96 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8220,47 +8220,6 @@ ChIP-Seq, and analysis of metagenomic data.")
(properties `((lint-hidden-cpe-vendors . ("openjsf" "qs_project"))))
(license license:artistic2.0)))
-(define-public express-beta-diversity
- (package
- (name "express-beta-diversity")
- (version "1.0.8")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/dparks1134/ExpressBetaDiversity";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0s0yzg5c21349rh7x4w9266jsvnp7j1hp9cf8sk32hz8nvrj745x"))))
- (build-system gnu-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (delete 'configure)
- (add-before 'build 'enter-source
- (lambda _
- (chdir "source")))
- (replace 'check
- (lambda _
- (invoke "../bin/ExpressBetaDiversity" "-u")))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append #$output "/bin")))
- (install-file "../scripts/convertToEBD.py" bin)
- (install-file "../bin/ExpressBetaDiversity" bin)))))))
- (inputs
- (list python-2))
- (home-page "https://github.com/dparks1134/ExpressBetaDiversity";)
- (synopsis "Taxon- and phylogenetic-based beta diversity measures")
- (description
- "Express Beta Diversity (EBD) calculates ecological beta diversity
-(dissimilarity) measures between biological communities. EBD implements a
-variety of diversity measures including those that make use of phylogenetic
-similarity of community members.")
- (license license:gpl3+)))
-
(define-public fasttree
(package
(name "fasttree")
