rekado pushed a commit to branch master
in repository guix.
commit 2cc511083239d5579aafef6a9dea03f36a1c1b2b
Author: Ricardo Wurmus <[email protected]>
Date: Wed Jul 4 17:43:33 2018 +0200
gnu: Add r-genelendatabase.
* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a6a8216..5e08143 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -167,6 +167,35 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are \"active\" by
default." )
(license license:artistic2.0)))
+(define-public r-genelendatabase
+ (package
+ (name "r-genelendatabase")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/experiment/" instead of "bioc/".
+ (uri (string-append "https://bioconductor.org/packages/";
+ "release/data/experiment/src/contrib"
+ "/geneLenDataBase_" version ".tar.gz"))
+ (sha256
+ (base32
+ "07mmmn53kb7v14msc13dsbm8ghssbvwcrhifrk15hn37bw2p4ja5"))))
+ (properties
+ `((upstream-name . "geneLenDataBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rtracklayer" ,r-rtracklayer)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page "https://bioconductor.org/packages/geneLenDataBase/";)
+ (synopsis "Lengths of mRNA transcripts for a number of genomes")
+ (description
+ "This package provides the lengths of mRNA transcripts for a number of
+genomes and gene ID formats, largely based on the UCSC table browser.")
+ (license license:lgpl2.0+)))
+
+
(define-public r-hpar
(package
(name "r-hpar")
