This one is in the queue. On Wed, Sep 16, 2015 at 08:53:13AM +0200, Pjotr Prins wrote: > * gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable. > --- > gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ > 1 file changed, 25 insertions(+) > > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm > index 1f34211..b9e1158 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -2642,3 +2642,28 @@ position for indels. Bio-locus allows users to store > this chr+pos or > chr+pos+alt information in a database.") > (home-page "https://github.com/pjotrp/bio-locus";) > (license license:expat))) > + > +(define-public bio-blastxmlparser > + (package > + (name "bio-blastxmlparser") > + (version "2.0.4") > + (source > + (origin > + (method url-fetch) > + (uri (rubygems-uri "bio-blastxmlparser" version)) > + (sha256 > + (base32 > + "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692")))) > + (build-system ruby-build-system) > + (propagated-inputs > + `(("ruby-bio-logger" ,ruby-bio-logger) > + ("ruby-nokogiri" ,ruby-nokogiri))) > + (inputs > + `(("ruby-rspec" ,ruby-rspec))) > + (synopsis "Fast big data BLAST XML parser and library") > + (description "Very fast parallel big-data BLAST XML file parser > +which can be used as command line utility. Use blastxmlparser to: > +Parse BLAST XML; filter output; generate FASTA, JSON, YAML, RDF, > +JSON-LD, HTML, csv, tabular output etc.") > + (home-page "http://github.com/pjotrp/blastxmlparser";) > + (license license:expat))) > -- > 2.4.3 > >
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