On 06/10/15 21:52, Ben Woodcroft wrote:
On 06/10/15 19:48, Efraim Flashner wrote:
diamond:
fails on non-x86_64 targets.
This package is part of bioinformatics.scm so it may not be intended for
non-x86_64 targets.
I imagine it is safe to say so for diamond, but I've asked the authors
just in case.
https://github.com/bbuchfink/diamond/issues/18
The author agrees. Patch attached.
ben
>From 9ec17df08fef730c415935e6dabf1a161511382c Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <[email protected]>
Date: Wed, 14 Oct 2015 20:21:43 +1000
Subject: [PATCH] gnu: diamond: Restrict supported systems to x86_64-linux.
* gnu/packages/bioinformatics.scm (diamond) [supported-systems]: Restrict to
x86_64-linux.
---
gnu/packages/bioinformatics.scm | 3 +++
1 file changed, 3 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4b7f76b..74a738e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -970,6 +970,9 @@ translated DNA query sequences against a protein reference database (BLASTP
and BLASTX alignment mode). The speedup over BLAST is up to 20,000 on short
reads at a typical sensitivity of 90-99% relative to BLAST depending on the
data and settings.")
+ ;; diamond fails to build on other platforms
+ ;; https://github.com/bbuchfink/diamond/issues/18
+ (supported-systems '("x86_64-linux"))
(license (license:non-copyleft "file://src/COPYING"
"See src/COPYING in the distribution."))))
--
2.4.3
