Dear Guix, Here's a patch for kaiju. A C++ program without any dependencies, plus some additional scripts that need perl.
Kind regards, Roel Janssen
>From ed45f47f7514faf10710b41a7d5e9cdaa8217c70 Mon Sep 17 00:00:00 2001 From: Roel Janssen <[email protected]> Date: Thu, 1 Jun 2017 15:01:51 +0200 Subject: [PATCH] gnu: Add kaiju. * gnu/packages/bioinformatics (kaiju): New variable. --- gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ec69f50..a8ad424 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3214,6 +3214,43 @@ data.") (supported-systems '("x86_64-linux")) (license license:bsd-3))) +(define-public kaiju + (package + (name "kaiju") + (version "1.5.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/bioinformatics-centre/kaiju/archive/v"; + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0afbfalfw9y39bkwnqjrh9bghs118ws1pzj5h8l0nblgn3mbjdks")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; There are no tests. + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'move-to-src-dir + (lambda _ (chdir "src") #t)) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (mkdir-p bin) + (chdir "..") + (copy-recursively "bin" bin) + (copy-recursively "util" bin))))))) + (inputs + `(("perl" ,perl))) + (home-page "http://kaiju.binf.ku.dk/";) + (synopsis "Fast and sensitive taxonomic classification for metagenomics") + (description "Kaiju is a program for sensitive taxonomic classification +of high-throughput sequencing reads from metagenomic whole genome sequencing +experiments.") + (license license:gpl3+))) + (define-public macs (package (name "macs") -- 2.7.4
