Hi,
zimoun <[email protected]> writes:
> In this context, since 'lispy' syntax is not mainstream (and will
> never be), it appears to me as a hard position.
We’ve got you covered here: the GWL has built-in support for Wisp, a
pretty language extension for Guile. It also comes with a bunch of
extra syntax support to make the definition of workflows easier.
Here’s a convoluted artificial example:
--8<---------------cut here---------------start------------->8---
define-module
test
use-modules
guix workflows
guix processes
gnu packages bioinformatics
gnu packages python
process: simple-test
package-inputs
list python samtools
data-inputs
list "sample.bam" "hg38.fa" "abc"
procedure #---{python}
import os
def hello():
print "hello from python 3"
print GWL['data-inputs']
print GWL['name']
hello()
---
workflow: example-workflow
processes
list simple-test
--8<---------------cut here---------------end--------------->8---
Put this in a file called “test.wisp” and add the directory to the
GUIX_WORKFLOW_PATH and you’re good to go.
Note that the “simple-test” process definition embeds Python code. A
number of other languages can be supported easily.
I don’t think syntax should hold you back.
--
Ricardo
GPG: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC
https://elephly.net
