Hi. I've had a similiar issue, using server mode. After increasing the CACHE a bit, (from the default 16mb to 256mb) things smoothed out quite well and database performance improved substantially.
Simply visit http://www.h2database.com/html/performance.html for some excellent performance suggestions. To change the cache, please visit http://www.h2database.com/html/features.html#cache_settings for instructions. Best regards Ewald
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