Re: [HCP-Users] surface viewer

[Glasser, Matthew]

If you go in the information popup window ("i" button at the top right of the toolbar) and click the "Volume ID" button.  You should be able to click points in the "all" 3 pane volume view mode and have the slices move.   If this doesn't work for you, we need to know what platform you are running Connectome Workbench on. Peace, Matt. From: Jennifer Elam <el...@pcg.wustl.edu> Date: Tuesday, June 25, 2013 7:31 AM To: 'romain valabregue' <romain.valabre...@upmc.fr> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] surface viewer Hi Romain, You can use the P, C, and A (parasagittal, coronal, axial): Slice Indices/Coordinates controls in the Workbench Toolbar to toggle or scroll through volume slices in Volume view. Is that the kind of navigation you are talking about?   Jenn   Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org   From: romain valabregue [mailto:romain.valabre...@upmc.fr] Sent: Tuesday, June 25, 2013 8:28 AM To: Jennifer Elam Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] surface viewer   Hello thanks this is indeed a nice viewer. well done! In the volume view I coul not navigate within the slice with the mouse (like in all 3 plan 3D view) do I miss something ? thanks again Romain 24/06/2013 17:33, Jennifer Elam a écrit : Hi Romain,   We recommend using Connectome Workbench, the visualization software being created by and for the HCP. You can get the latest version (beta v0.82, released June 14, 2013) at http://humanconnectome.org/connectome/get-connectome-workbench.html   along with a detailed tutorial and tutorial dataset based on HCP data from 20 unrelated subjects that were released in March 2013. Note: you will need to login to ConnectomeDB and sign the data use terms in order to download Workbench if you have not already done so.   Workbench has an intuitive and easy to use interface for viewing HCP files and your own data. Currently, you can view brain volumes, surfaces, labels, foci, fMRI time series maps, task contrasts, and a demonstration group average functional connectivity dataset. GIFTI, NIFTI, and the new CIFTI format (see Glasser et al. 2013) are supported.   The HCP is looking for users to give Connectome Workbench a try and give us feedback on what they like and don't link about the platform and what new features are needed.   Hope you try it out and thanks, Romain, for giving us the opportunity to advertise!        Best, Jennifer   Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org     -----Original Message----- From: hcp-users-boun...@humanconnectome.org [mailto:hcp-users-boun...@humanconnectome.org] On Behalf Of romain valabregue Sent: Monday, June 24, 2013 10:03 AM To: hcp-users@humanconnectome.org Subject: [HCP-Users] surface viewer   Hello   the .gii surface and label files can not be open with freeview ... Which wiewer would you then advice ?     Many thanks   Romain _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users