Just this: -------------------------------------------- /usr/share/fsl/5.0/bin/probtrackx2 -x /NAS_II/Public-Data/Parcellation/100307/Diffusion/Masks/MNI2DTI_shadowreg_L_Thalamus.nii.gz -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 5000 --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --forcedir --opd -s /NAS_II/Public-Data/Parcellation/100307/Diffusion/data.bedpostX/merged -m /NAS_II/Public-Data/Parcellation/100307/Diffusion/data.bedpostX/nodif_brain_mask --dir=/NAS_II/Public-Data/Parcellation/100307/Diffusion/L_Thalamocortico_connection --waypoints=/NAS_II/Public-Data/Parcellation/100307/Diffusion/L_Thalamocortico_connection/waypoints.txt --waycond=AND ---------------------------------------------
2013/7/17 Glasser, Matthew <[email protected]> > What is your probtrackx.log file say? > > Peace, > > Matt. > > From: Huang Su-Chun <[email protected]> > Date: Wednesday, July 17, 2013 5:45 PM > To: "[email protected]" <[email protected]> > Subject: [HCP-Users] A question about FDT 3.0 > > Hello all, > > I want to run probabilistic tracking on one of the HCP data, all the > setting I put in is the same as usual (seed mask, waypoint masks, and > output directory), however, the error message as follow keep shows up : > > Errors: Image Exception : #3 :: Mask of different size used in matrix () > terminate called after throwing an instance of > 'RBD_COMMOM :: BaseException' > > > Anyone has any idea what's going on here? Did I miss something? > > Thank you very much, > > Su > -- > Su-Chun Huang > Research Scientist > Integrated Brain Imaging Center > Department of Radiology > Seattle, WA 98105 > 206-687-0113 > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > -- Su-Chun Huang Research Scientist Integrated Brain Imaging Center Department of Radiology Seattle, WA 98105 206-687-0113 _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
