The data is a Q2 data, this is the waypoint txt: --------- /NAS_II/Public-Data/Parcellation/100307/Diffusion/Masks/MNI2DTI_shadowreg_L_Cortex.nii.gz ---------- and this is the fdt_log ----------------- set tool probtrackx set probtrack(bedpost_dir) /NAS_II/Public-Data/Parcellation/100307/Diffusion/data.bedpostX set probtrack(xfm) set probtrack(mode) seedmask set probtrack(exclude_yn) 0 set probtrack(usereference_yn) 0 set probtrack(verbose_yn) 0 set probtrack(loopcheck_yn) 1 set probtrack(modeuler_yn) 0 set probtrack(curvature) 0.2 set probtrack(nsteps) 2000 set probtrack(steplength) 0.5 set probtrack(nparticles) 5000 set probtrack(fibthresh) 0.01 set probtrack(distthresh) 0.0 set probtrack(sampvox) 0.0 set probtrack(oneway_yn) 1 set probtrack(wayorder_yn) 0 set probtrack(waycond) AND set probtrack(reference) /NAS_II/Public-Data/Parcellation/100307/Diffusion/Masks/MNI2DTI_shadowreg_L_Thalamus.nii.gz set probtrack(output) /NAS_II/Public-Data/Parcellation/100307/Diffusion/L_Thalamocortico_connection set probtrack(waypoint_yn) 1 .fdt.data.targets.wf.tf.targets insert end /NAS_II/Public-Data/Parcellation/100307/Diffusion/Masks/MNI2DTI_shadowreg_L_Cortex.nii.gz ----------------------
Thank you very much! Su 2013/7/17 Glasser, Matthew <[email protected]> > Is this Q1 or Q2 data. Can you also post the contents of waypoints.txt. > > Peace, > > Matt. > > From: Huang Su-Chun <[email protected]> > Date: Wednesday, July 17, 2013 5:59 PM > To: Matt Glasser <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] A question about FDT 3.0 > > Just this: > -------------------------------------------- > /usr/share/fsl/5.0/bin/probtrackx2 -x > /NAS_II/Public-Data/Parcellation/100307/Diffusion/Masks/MNI2DTI_shadowreg_L_Thalamus.nii.gz > -l --onewaycondition -c 0.2 -S 2000 --steplength=0.5 -P 5000 > --fibthresh=0.01 --distthresh=0.0 --sampvox=0.0 --forcedir --opd -s > /NAS_II/Public-Data/Parcellation/100307/Diffusion/data.bedpostX/merged -m > /NAS_II/Public-Data/Parcellation/100307/Diffusion/data.bedpostX/nodif_brain_mask > --dir=/NAS_II/Public-Data/Parcellation/100307/Diffusion/L_Thalamocortico_connection > --waypoints=/NAS_II/Public-Data/Parcellation/100307/Diffusion/L_Thalamocortico_connection/waypoints.txt > --waycond=AND > --------------------------------------------- > > > > > 2013/7/17 Glasser, Matthew <[email protected]> > >> What is your probtrackx.log file say? >> >> Peace, >> >> Matt. >> >> From: Huang Su-Chun <[email protected]> >> Date: Wednesday, July 17, 2013 5:45 PM >> To: "[email protected]" <[email protected]> >> Subject: [HCP-Users] A question about FDT 3.0 >> >> Hello all, >> >> I want to run probabilistic tracking on one of the HCP data, all the >> setting I put in is the same as usual (seed mask, waypoint masks, and >> output directory), however, the error message as follow keep shows up : >> >> Errors: Image Exception : #3 :: Mask of different size used in matrix () >> terminate called after throwing an instance of >> 'RBD_COMMOM :: BaseException' >> >> >> Anyone has any idea what's going on here? Did I miss something? >> >> Thank you very much, >> >> Su >> -- >> Su-Chun Huang >> Research Scientist >> Integrated Brain Imaging Center >> Department of Radiology >> Seattle, WA 98105 >> 206-687-0113 >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > > > -- > Su-Chun Huang > Research Scientist > Integrated Brain Imaging Center > Department of Radiology > Seattle, WA 98105 > 206-687-0113 > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > -- Su-Chun Huang Research Scientist Integrated Brain Imaging Center Department of Radiology Seattle, WA 98105 206-687-0113 _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
