In addition to those surface-based labels, which work for the CIFTI files (dtseries.nii), the volume NIFTI files (.nii.gz) are in MNI152 space. Therefore, any of the atlases provided with FSLView (or SPM for that matter) should work to provide labels in volume-space.
--Greg ____________________________________________________________________ Greg Burgess, Ph.D. Staff Scientist, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology Email: [email protected] On Mar 17, 2014, at 8:57 AM, Donna Dierker <[email protected]> wrote: > Explore these label goodies in each subject's structural directory: > > ./MNINonLinear/110411.BA.164k_fs_LR.dlabel.nii > ./MNINonLinear/110411.L.BA.164k_fs_LR.label.gii > ./MNINonLinear/110411.L.aparc.164k_fs_LR.label.gii > ./MNINonLinear/110411.L.aparc.a2009s.164k_fs_LR.label.gii > ./MNINonLinear/110411.R.BA.164k_fs_LR.label.gii > ./MNINonLinear/110411.R.aparc.164k_fs_LR.label.gii > ./MNINonLinear/110411.R.aparc.a2009s.164k_fs_LR.label.gii > ./MNINonLinear/110411.aparc.164k_fs_LR.dlabel.nii > ./MNINonLinear/110411.aparc.a2009s.164k_fs_LR.dlabel.nii > ./MNINonLinear/Native/110411.BA.native.dlabel.nii > ./MNINonLinear/Native/110411.L.BA.native.label.gii > ./MNINonLinear/Native/110411.L.aparc.a2009s.native.label.gii > ./MNINonLinear/Native/110411.L.aparc.native.label.gii > ./MNINonLinear/Native/110411.R.BA.native.label.gii > ./MNINonLinear/Native/110411.R.aparc.a2009s.native.label.gii > ./MNINonLinear/Native/110411.R.aparc.native.label.gii > ./MNINonLinear/Native/110411.aparc.a2009s.native.dlabel.nii > ./MNINonLinear/Native/110411.aparc.native.dlabel.nii > ./MNINonLinear/fsaverage_LR32k/110411.BA.32k_fs_LR.dlabel.nii > ./MNINonLinear/fsaverage_LR32k/110411.L.BA.32k_fs_LR.label.gii > ./MNINonLinear/fsaverage_LR32k/110411.L.aparc.32k_fs_LR.label.gii > ./MNINonLinear/fsaverage_LR32k/110411.L.aparc.a2009s.32k_fs_LR.label.gii > ./MNINonLinear/fsaverage_LR32k/110411.R.BA.32k_fs_LR.label.gii > ./MNINonLinear/fsaverage_LR32k/110411.R.aparc.32k_fs_LR.label.gii > ./MNINonLinear/fsaverage_LR32k/110411.R.aparc.a2009s.32k_fs_LR.label.gii > ./MNINonLinear/fsaverage_LR32k/110411.aparc.32k_fs_LR.dlabel.nii > ./MNINonLinear/fsaverage_LR32k/110411.aparc.a2009s.32k_fs_LR.dlabel.nii > ./T1w/110411/label > ./T1w/110411/label/BA.ctab > ./T1w/110411/label/BA.thresh.ctab > ./T1w/110411/label/aparc.annot.DKTatlas40.ctab > ./T1w/110411/label/aparc.annot.a2009s.ctab > ./T1w/110411/label/aparc.annot.ctab > ./T1w/110411/label/lh.BA.annot > ./T1w/110411/label/lh.BA.thresh.annot > ./T1w/110411/label/lh.BA1.label > ./T1w/110411/label/lh.BA1.thresh.label > ./T1w/110411/label/lh.BA2.label > ./T1w/110411/label/lh.BA2.thresh.label > ./T1w/110411/label/lh.BA3a.label > ./T1w/110411/label/lh.BA3a.thresh.label > ./T1w/110411/label/lh.BA3b.label > ./T1w/110411/label/lh.BA3b.thresh.label > ./T1w/110411/label/lh.BA44.label > ./T1w/110411/label/lh.BA44.thresh.label > ./T1w/110411/label/lh.BA45.label > ./T1w/110411/label/lh.BA45.thresh.label > ./T1w/110411/label/lh.BA4a.label > ./T1w/110411/label/lh.BA4a.thresh.label > ./T1w/110411/label/lh.BA4p.label > ./T1w/110411/label/lh.BA4p.thresh.label > ./T1w/110411/label/lh.BA6.label > ./T1w/110411/label/lh.BA6.thresh.label > ./T1w/110411/label/lh.MT.label > ./T1w/110411/label/lh.MT.thresh.label > ./T1w/110411/label/lh.V1.label > ./T1w/110411/label/lh.V1.thresh.label > ./T1w/110411/label/lh.V2.label > ./T1w/110411/label/lh.V2.thresh.label > ./T1w/110411/label/lh.aparc.DKTatlas40.annot > ./T1w/110411/label/lh.aparc.a2009s.annot > ./T1w/110411/label/lh.aparc.annot > ./T1w/110411/label/lh.cortex.deformed.label > ./T1w/110411/label/lh.cortex.label > ./T1w/110411/label/lh.cortex.prehires.label > ./T1w/110411/label/lh.entorhinal_exvivo.label > ./T1w/110411/label/lh.perirhinal.label > ./T1w/110411/label/rh.BA.annot > ./T1w/110411/label/rh.BA.thresh.annot > ./T1w/110411/label/rh.BA1.label > ./T1w/110411/label/rh.BA1.thresh.label > ./T1w/110411/label/rh.BA2.label > ./T1w/110411/label/rh.BA2.thresh.label > ./T1w/110411/label/rh.BA3a.label > ./T1w/110411/label/rh.BA3a.thresh.label > ./T1w/110411/label/rh.BA3b.label > ./T1w/110411/label/rh.BA3b.thresh.label > ./T1w/110411/label/rh.BA44.label > ./T1w/110411/label/rh.BA44.thresh.label > ./T1w/110411/label/rh.BA45.label > ./T1w/110411/label/rh.BA45.thresh.label > ./T1w/110411/label/rh.BA4a.label > ./T1w/110411/label/rh.BA4a.thresh.label > ./T1w/110411/label/rh.BA4p.label > ./T1w/110411/label/rh.BA4p.thresh.label > ./T1w/110411/label/rh.BA6.label > ./T1w/110411/label/rh.BA6.thresh.label > ./T1w/110411/label/rh.MT.label > ./T1w/110411/label/rh.MT.thresh.label > ./T1w/110411/label/rh.V1.label > ./T1w/110411/label/rh.V1.thresh.label > ./T1w/110411/label/rh.V2.label > ./T1w/110411/label/rh.V2.thresh.label > ./T1w/110411/label/rh.aparc.DKTatlas40.annot > ./T1w/110411/label/rh.aparc.a2009s.annot > ./T1w/110411/label/rh.aparc.annot > ./T1w/110411/label/rh.cortex.deformed.label > ./T1w/110411/label/rh.cortex.label > ./T1w/110411/label/rh.cortex.prehires.label > ./T1w/110411/label/rh.entorhinal_exvivo.label > ./T1w/110411/label/rh.perirhinal.label > ./T1w/110411/mri/aseg.auto_noCCseg.label_intensities.txt > ./T1w/110411/mri/talairach.label_intensities.txt > > Also check out these links: > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases > http://brainvis.wustl.edu/wiki/index.php/Caret:Atlases:Conte69_Atlas > > Donna > > > On Mar 14, 2014, at 7:18 PM, Hai Shu <[email protected]> wrote: > >> Dear Sir or Madam, >> Do you have any corresponding structural anatomical atlas for the ICA-FIX >> denoised rfMRI data? From the atlas, I hope to know which voxels belong to a >> certain Brodmann area or subcortical region like hippocampus. >> Thanks. >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
