Hi Pablo, Caret software (http://brainvis.wustl.edu/wiki/index.php/Caret:About) is also able to read a GIFTI surface file and export to an STL surface file.
John Harwell On Sep 30, 2014, at 1:31 PM, Glasser, Matthew wrote: > mris_convert (a part of the FreeSurfer software package) will convert from > GIFTI to .stl > > Peace, > > Matt. > > On 9/30/14, 1:27 PM, "Jennifer Elam" <[email protected]> wrote: > >> Hi Pablo, >> We aren't currently set up to distribute solid model (e.g. .iges) or >> Stereolithography surface information (e.g. .stl) from HCP data. We do >> create brain surfaces of different types, including white matter and pial >> (outer cortical) surfaces in the GIFTI neuroimaging file format >> (http://www.nitrc.org/projects/gifti/). If GIFTI files will work, I can >> point you to the right data package(s) to download depending on what you >> want to do. I am also asking our brain imaging software developers if they >> know anything about converting the information in GIFTI files into one of >> the formats you asked about and will let you know if they come up with >> ideas. >> >> Best, >> Jenn >> >> Jennifer Elam, Ph.D. >> Outreach Coordinator, Human Connectome Project >> Washington University School of Medicine >> Department of Anatomy and Neurobiology, Box 8108 >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> [email protected] >> www.humanconnectome.org >> >> >> -----Original Message----- >> From: [email protected] >> [mailto:[email protected]] On Behalf Of >> [email protected] >> Sent: Tuesday, September 30, 2014 9:09 AM >> To: [email protected] >> Subject: [HCP-Info] [Contact Form]: solid or surface data >> >> Name: Pablo Saez >> >> Email: [email protected] >> >> Institution: University of Oxford >> >> Area of Scientific Interest: Maths and computational mechanics >> >> Subject: [Contact Form]: solid or surface data >> >> Comments: >> Dear HCP, >> >> First at all, I really want to congrats you for this amazing work! >> I and my colleges are focus on computational mechanics and we are willing >> to >> use some of your data to carry out our research. >> I have to admit that I am lost in this huge amount information that you >> collect and post in the internet. >> My question is: Is there the possibility of extracting solid model (e.g. >> .iges) or surface information (e.g. .stl) from data?? I download the >> workbench and related data. If so, It is possible to distinguish between >> cortical and white matter? >> >> Thanks and congrats again for this work! >> Best Regards, >> Pablo >> >> >> _______________________________________________ >> Info mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/info >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
