Dear Matt, Thanks for your reply! That helped me greatly!
Best, Ikko 2014-11-23 0:57 GMT+09:00 Glasser, Matthew <[email protected]>: > Have a look at the HCP diffusion pipeline: > > > https://github.com/Washington-University/Pipelines/tree/master/DiffusionPreprocessing > > In particular scripts/eddy_postproc.sh > > Peace, > > Matt. > > From: 木村一皓 <[email protected]> > Date: Saturday, November 22, 2014 at 3:25 AM > To: "[email protected]" <[email protected]> > Subject: [HCP-Users] Questions about preprocesssing of dMRI data > > Dear all, > > I'd like to take the same preprocessing steps as HCP also in my own > data of dMRI. > Though I could do 'TOPUP' and 'EDDY' from FSL, I don't konw what I should > do in Gardient nonlinearlity correction and calculation of gradient > bvalue/bevctor deviation steps to make the file grad_dev.nii.gz. > Could somebody tell me what is the command to do this in FSL? > > Best, > Ikko > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
