Re: [HCP-Users] requirements for HCP pipeline?

[Harms, Michael]

Hi, I'm not sure what those numbers for your T1w scan refer to.  For fMRI data, you will need either a traditional gradient echo field map, or a phase-encoding reversed pair of scans for distortion correction. Glasser et al. 2013 is the published reference for the HCP pipelines. cheers, -MH --  Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO  63110 Email: mha...@wustl.edu From: Marta Moreno <mmorenoort...@icloud.com> Date: Monday, February 2, 2015 10:45 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] requirements for HCP pipeline? Hi users, I am going to analyze some data acquired before the HCP pipeline was established here at PI and I am wondering which would be the minimum requisites I need. I had collected 2T1w (512, 512, 236), 1T2 and resting state (3x3x3mm; TR=2). Also would need some boiler plate documentation to write the methods from another data set already analyzed through the HCP pipeline. Any recommendation, please? Thanks, _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users