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You also need a T2w scan unless you want to do major hacking on the pipelines.
Peace,
Matt.
From: Jennifer Elam <[email protected]>
Date: Tuesday, February 3, 2015 at 11:25 AM To: "Harms, Michael" <[email protected]>, 'Marta Moreno' <[email protected]>, "[email protected]" <[email protected]> Subject: Re: [HCP-Users] requirements for HCP pipeline? Hi Marta, As a reminder, there’s also lots of good documentation on the pipelines at
https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage. Might be particularly useful for you methods write up. Best, Jenn Jennifer Elam, Ph.D. From:
[email protected] [mailto:[email protected]]
On Behalf Of Harms, Michael Hi, I'm not sure what those numbers for your T1w scan refer to. For fMRI data, you will need either a traditional gradient echo field map, or a phase-encoding
reversed pair of scans for distortion correction. Glasser et al. 2013 is the published reference for the HCP pipelines. cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email:
[email protected] From:
Marta Moreno <[email protected]> Hi users,
I am going to analyze some data acquired before the HCP pipeline was established here at PI and I am wondering which would be the minimum requisites I need. I
had collected 2T1w (512, 512, 236), 1T2 and resting state (3x3x3mm; TR=2). Also would need some boiler plate documentation to write the methods from another data set already analyzed through the HCP pipeline. Any recommendation, please? Thanks, _______________ _______________________________________________ The materials in this message are private and may contain Protected Healthcare Information or other
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- [HCP-Users] requirements for HCP pipeline? Marta Moreno
- Re: [HCP-Users] requirements for HCP pipeline? Harms, Michael
- Re: [HCP-Users] requirements for HCP pipeline? Jennifer Elam
- Re: [HCP-Users] requirements for HCP pipelin... Glasser, Matthew
- Re: [HCP-Users] requirements for HCP pip... Marta Moreno
