[HCP-Users] FW: Error Running Probtrackx

[Glasser, Matthew]

From: Stamatios Sotiropoulos <stamatios.sotiropou...@ndcn.ox.ac.uk> Date: Thursday, June 4, 2015 at 10:36 AM To: Matt Glasser <glass...@wusm.wustl.edu> Subject: Re: [HCP-Users] Error Running Probtrackx Hi This is not released yet. If you call bedpostx or xfibres without any parameters you will see what options are supported. Cheers Stam On 4 Jun 2015, at 15:32, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote: That’s a question for Stam, but if you want 3 fibers, you would need to run --nf=3. Peace, Matt. From: <Archer>, Derek B <arche...@ad.ufl.edu> Date: Thursday, June 4, 2015 at 9:30 AM To: Matt Glasser <glass...@wusm.wustl.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: RE: [HCP-Users] Error Running Probtrackx Hi Matt,   Sorry, I was mistaken on this.  However, what I did do is run model=3 instead of model=2.  I remember from a previous post that this is released in FSL yet.  Should this have given an error within bedpostx? Thanks, Derek   From: Glasser, Matthew [mailto:glass...@wusm.wustl.edu] Sent: Thursday, June 04, 2015 3:28 PM To: Archer,Derek B; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] Error Running Probtrackx   Are samples able to make it from one ROI to another?  How many mean_f#samples files do you have?     Peace,   Matt.   From: <Archer>, Derek B <arche...@ad.ufl.edu> Date: Thursday, June 4, 2015 at 4:40 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] Error Running Probtrackx   Hello,   I have completed bedpostx on HCP subjects with --nf=3.  I then used these files to run probtrackx2, and when I look at the waytotal files, the value is 0.  Additionally, when it loads the bedpostx files, it says the number of fibers is 2.  Is there an option that I need to input to get probtrackx2 to analyze the bedpost data with 3 fibers?   Thanks, Derek _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users