Re: [HCP-Users] T1w/wmparc_1mm

[Glasser, Matthew]

You need to look at the FreeSurfer logs to find out where it is going wrong. Peace, Matt. From: Marta Moreno <mmorenoort...@icloud.com> Date: Sunday, June 28, 2015 at 8:20 AM To: Matt Glasser <glass...@wusm.wustl.edu> Cc: HCP Users <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] T1w/wmparc_1mm Hi Matt, wmparc.mgz file does not exist. I run FreeSurfer pipeline again as I did not have gradunwarp installed but still I am not getting this file. Any idea, please? Best wishes, Leah _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons 1051 Riverside Dr., Unit 21 New York, NY 10032 office# 5700 phone: (646) 774-5428 email: mm4...@cumc.columbia.edu On Jun 26, 2015, at 8:22 AM, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote: It sounds like the FreeSurfer pipeline might not have finished okay.  Does the ${StudyFolder}/${Subject}/T1w/${Subject}/mri/wmparc.mgz file exist? Peace, Matt. On 6/25/15, 9:14 PM, "hcp-users-boun...@humanconnectome.org on behalf of Marta Moreno" <hcp-users-boun...@humanconnectome.org on behalf of mmorenoort...@icloud.com> wrote: Hi users, I run PostfreesurferPipeline script and I am getting the next error: ³can not open T1w/wmparc_1mm for reading². I checked and the file is not there. I am running Freesurfer v5.3.0, not the HCP version. Any help, please? Thanks, Leah _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users