Re: [HCP-Users] ft_read_cifti too many grayordinates

[Glasser, Matthew]

Some of us don’t think that code should do that.  You can manually remove the NaNs, or use alternative software (option B): https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ Peace, Matt. From: <hcp-users-boun...@humanconnectome.org> on behalf of Janine Bijsterbosch <janine.bijsterbo...@ndcn.ox.ac.uk> Date: Monday, July 20, 2015 at 9:52 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] ft_read_cifti too many grayordinates Hi, When I use ft_read_cifti to load the dense connectome I end up with 96854*96854 grayordinates and lots of NaN's. This appears to be because the centre of the brain is included in the cortical surfaces, which I can remove manually to end up with the expected 91282 grayordinates and no NaN's. However, I was just wondering if this behaviour is expected and fixing it manually is ok, or if this is indicative of other associated bugs please? Thanks!! Best wishes, Janine ----- Dr Janine Bijsterbosch Postdoctoral Researcher FMRIB Centre, University of Oxford John Radcliffe Hospital Oxford, United Kingdom janine.bijsterbo...@ndcn.ox.ac.uk _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users