HI Matt - thanks - so is there an option with ft_read_cifti for excluding those grayordinates that are not part of the "standard" 91k set, upon read-in? Cheers
> On 20 Jul 2015, at 17:06, Glasser, Matthew <[email protected]> wrote: > > Some of us don’t think that code should do that. You can manually remove the > NaNs, or use alternative software (option B): > > https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ > <https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ> > > Peace, > > Matt. > > From: <[email protected] > <mailto:[email protected]>> on behalf of Janine > Bijsterbosch <[email protected] > <mailto:[email protected]>> > Date: Monday, July 20, 2015 at 9:52 AM > To: "[email protected] <mailto:[email protected]>" > <[email protected] <mailto:[email protected]>> > Subject: [HCP-Users] ft_read_cifti too many grayordinates > > Hi, > > When I use ft_read_cifti to load the dense connectome I end up with > 96854*96854 grayordinates and lots of NaN's. This appears to be because the > centre of the brain is included in the cortical surfaces, which I can remove > manually to end up with the expected 91282 grayordinates and no NaN's. > However, I was just wondering if this behaviour is expected and fixing it > manually is ok, or if this is indicative of other associated bugs please? > > Thanks!! > > Best wishes, > > Janine > > ----- > Dr Janine Bijsterbosch > Postdoctoral Researcher > FMRIB Centre, University of Oxford > John Radcliffe Hospital > Oxford, United Kingdom > [email protected] <mailto:[email protected]> > _______________________________________________ > HCP-Users mailing list > [email protected] <mailto:[email protected]> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > <http://lists.humanconnectome.org/mailman/listinfo/hcp-users> > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [email protected] http://www.fmrib.ox.ac.uk/~steve <http://www.fmrib.ox.ac.uk/~steve> --------------------------------------------------------------------------- Stop the cultural destruction of Tibet <http://smithinks.net/> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
