It seems using Connectome Workbench may be the best way forward with mapping my MEG statistics on a common brain template. I have opened Conte69_atlas-v2.LR.164k_fs_LR.wb.spec, which seems to be the atlas used to generate FS parcellations in the HCP pipeline.
Now, I will need to map values correlation values - there will be only one value per area (for example, a .csv file with nonsense random data is attached). Should I be trying to make a foci file or is there a smarter way to go about it? Thanks for any advice, Jennifer McGill, Montreal Neurological Institute and Hospital Department of Neurology and Neurosurgery; 3801 University st, MP116, Montreal, QC H3A 2B4 Website: jennifergoldman.webs.com On Thu, Dec 3, 2015 at 1:25 PM, Jennifer Goldman < [email protected]> wrote: > Thank you for any insight or advice - This is my first use of freesurfer > (and MRI methods in general) so I apologize if the question is overly > simple. > > I have generated an analysis of HCP MEG data and have found correlations > of MEG metrics with Freesurfer volume and thickness measurements you made > available, which survive FDR correction. > > I would like make a parametric map - to plot significant correlations of > MEG metrics with cortical anatomy - on the brain template, showing negative > and positive correlations on a color spectrum. I have downloaded and > installed Freesurfer and am trying (not yet successfully) to find > appropriate methods on the Freesurfer Wiki page. > > Can you advise me how to associate a matrix of values describing p- and > correlation- values with a template brain relevant to the parcellation > scheme you have used? > > Thank you in advance and kind regards, > > Jennifer > > > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
area,corr FS_L_Bankssts_Area,0.953477334 FS_L_Caudalanteriorcingulate_Area,0.625179383 FS_L_Caudalmiddlefrontal_Area,0.393490274 FS_L_Cuneus_Area,0.376683914 FS_L_Entorhinal_Area,0.596241589 FS_L_Fusiform_Area,0.38484866 FS_L_Inferiorparietal_Area,0.770199067 FS_L_Inferiortemporal_Area,0.220673999 FS_L_Isthmuscingulate_Area,0.913879675 FS_L_Lateraloccipital_Area,0.850140768 FS_L_Lateralorbitofrontal_Area,0.434540897 FS_L_Lingual_Area,0.998572312 FS_L_Medialorbitofrontal_Area,0.824520462 FS_L_Middletemporal_Area,0.396225738 FS_L_Parahippocampal_Area,0.975657042 FS_L_Paracentral_Area,0.534604138 FS_L_Parsopercularis_Area,0.441788066 FS_L_Parsorbitalis_Area,0.39883667 FS_L_Parstriangularis_Area,0.626756506 FS_L_Pericalcarine_Area,0.075286951 FS_L_Postcentral_Area,0.657272926 FS_L_Posteriorcingulate_Area,0.319622494 FS_L_Precentral_Area,0.716022215 FS_L_Precuneus_Area,0.029417249 FS_L_Rostralanteriorcingulate_Area,0.31332385 FS_L_Rostralmiddlefrontal_Area,0.351845054 FS_L_Superiorfrontal_Area,0.85980303 FS_L_Superiorparietal_Area,0.481077196 FS_L_Superiortemporal_Area,0.444568417 FS_L_Supramarginal_Area,0.183611246 FS_L_Frontalpole_Area,0.4375529 FS_L_Temporalpole_Area,0.119757782 FS_L_Transversetemporal_Area,0.757851953 FS_L_Insula_Area,0.380449967 FS_R_Bankssts_Area,0.7659875 FS_R_Caudalanteriorcingulate_Area,0.497104581 FS_R_Caudalmiddlefrontal_Area,0.008744264 FS_R_Cuneus_Area,0.277146617 FS_R_Entorhinal_Area,0.941563915 FS_R_Fusiform_Area,0.236929715 FS_R_Inferiorparietal_Area,0.587581733 FS_R_Inferiortemporal_Area,0.565100635 FS_R_Isthmuscingulate_Area,0.668617495 FS_R_Lateraloccipital_Area,0.701115638 FS_R_Lateralorbitofrontal_Area,0.880115458 FS_R_Lingual_Area,0.396697569 FS_R_Medialorbitofrontal_Area,0.049757757 FS_R_Middletemporal_Area,0.834867523 FS_R_Parahippocampal_Area,0.289842283 FS_R_Paracentral_Area,0.501148297 FS_R_Parsopercularis_Area,0.894094731 FS_R_Parsorbitalis_Area,0.850919808 FS_R_Parstriangularis_Area,0.714174177 FS_R_Pericalcarine_Area,0.235172027 FS_R_Postcentral_Area,0.692441249 FS_R_Posteriorcingulate_Area,0.164336957 FS_R_Precentral_Area,0.172170156 FS_R_Precuneus_Area,0.904919799 FS_R_Rostralanteriorcingulate_Area,0.408032362 FS_R_Rostralmiddlefrontal_Area,0.688823351 FS_R_Superiorfrontal_Area,0.346612031 FS_R_Superiorparietal_Area,0.499866724 FS_R_Superiortemporal_Area,0.483710653 FS_R_Supramarginal_Area,0.334080482 FS_R_Frontalpole_Area,0.495413872 FS_R_Temporalpole_Area,0.03006408 FS_R_Transversetemporal_Area,0.801316625 FS_R_Insula_Area,0.293926952
