That looks like the same kind of error - an unset variable that is supposed to point to the location of the pipeline scripts.
Tim On Mon, Feb 8, 2016 at 5:52 PM, Dev vasu < [email protected]> wrote: > Dear Professor : > > I have resolved this issue on my own, but i still couldn't perform > pre-processing of DTI data , This time i am incurring following error : > > > *"Mo 8. Feb 22:40:00 CET 2016 - DiffPreprocPipeline.sh - Invoking Pre-Eddy > Steps/home/vasudev/Documents/workbench/HCPPIPEDIR/DiffusionPreprocessing/DiffPreprocPipeline_PreEddy.sh: > line 69: /global/scripts/log.shlib: No such file or directory "* > > > Could you please let me know if there is any documentation for DTI > Preprocessing . > > > Thanks > Vasudev > > On 8 February 2016 at 23:37, Glasser, Matthew <[email protected]> wrote: > >> That looks like you don’t have the pipelines environment script properly >> set up (empty/global/…). Have another look at the set up instructions. >> >> Peace, >> >> Matt. >> >> From: <[email protected]> on behalf of Dev vasu < >> [email protected]> >> Date: Monday, February 8, 2016 at 10:55 AM >> To: "[email protected]" <[email protected]> >> Subject: [HCP-Users] HCP Pipelines :DiffusionPreprocessing >> >> Dear Professor, >> >> I would like to use DiffusionPreprocessing Pipeline for my DTI >> structural connectivity analysis, I have completed the tutorial on how to >> use HCP Pipelines for Preprocessing, I have followed the instruction and i >> have provided the path to study folder and subject, when i run the >> DiffusionPreprocessing.sh, i am incurring following error >> >> >> *"./DiffPreprocPipeline.sh: line 96: /global/scripts/log.shlib: No such >> file or directory "* >> >> Although the file log.shlib is found in global directory , I am incurring >> the same error. >> >> Could you please clarify me. >> >> >> Thanks >> Vasudev >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
