Read the part about environment script: https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage
Peace, Matt. From: Dev vasu <[email protected]<mailto:[email protected]>> Date: Monday, February 8, 2016 at 9:10 PM To: Timothy Coalson <[email protected]<mailto:[email protected]>> Cc: Matt Glasser <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] HCP Pipelines :DiffusionPreprocessing Dear Sir, If possible could you please provide me some additional documentation on how to use efficiently use pre-processing pipelines, I have worked previously with SPM, HCP-Workbench is new for me, I have completed working on initial tutorials and started establishing DTI clinical data that we acquired at Hospital on Workbench, and i am facing several problems most of which might be very basic for you but for me ,i am currently stuck at this point, I want to study structural connectivity between vestibular system and M5 and i would like to use Workbench for my structural connectivity analysis . Currently i am doing initial preprocessing with the given pipelines . Thanks Vasudev On 9 February 2016 at 01:32, Timothy Coalson <[email protected]<mailto:[email protected]>> wrote: That looks like the same kind of error - an unset variable that is supposed to point to the location of the pipeline scripts. Tim On Mon, Feb 8, 2016 at 5:52 PM, Dev vasu <[email protected]<mailto:[email protected]>> wrote: Dear Professor : I have resolved this issue on my own, but i still couldn't perform pre-processing of DTI data , This time i am incurring following error : "Mo 8. Feb 22:40:00 CET 2016 - DiffPreprocPipeline.sh - Invoking Pre-Eddy Steps /home/vasudev/Documents/workbench/HCPPIPEDIR/DiffusionPreprocessing/DiffPreprocPipeline_PreEddy.sh: line 69: /global/scripts/log.shlib: No such file or directory " Could you please let me know if there is any documentation for DTI Preprocessing . Thanks Vasudev On 8 February 2016 at 23:37, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: That looks like you don't have the pipelines environment script properly set up (empty/global/...). Have another look at the set up instructions. Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Dev vasu <[email protected]<mailto:[email protected]>> Date: Monday, February 8, 2016 at 10:55 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] HCP Pipelines :DiffusionPreprocessing Dear Professor, I would like to use DiffusionPreprocessing Pipeline for my DTI structural connectivity analysis, I have completed the tutorial on how to use HCP Pipelines for Preprocessing, I have followed the instruction and i have provided the path to study folder and subject, when i run the DiffusionPreprocessing.sh, i am incurring following error "./DiffPreprocPipeline.sh: line 96: /global/scripts/log.shlib: No such file or directory " Although the file log.shlib is found in global directory , I am incurring the same error. Could you please clarify me. Thanks Vasudev _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
