Are you using hcp2blocks.m to generate an exchangeability block file for PALM? If so, check to make sure you are not including participants with a missing Father ID, because they will be excluded from the exchangeability block and you will see this same error. The April 2015 version of the code will warn you if this is the case.
Joe -- Joseph M. Orr, Ph.D. Assistant Professor Department of Psychology Texas A&M University College Station, TX On Wed, Apr 20, 2016 at 4:37 AM, Jarek Rokicki <[email protected]> wrote: > Dear hcp-Experts, > > I tried to find if there are significant differences in the myelination in > two groups of subjects using PALM. Therefore after processing files I've > merged them using wb_command -cifti-merge > > File looks like this: > wb_command -file-information output_32k_myelin.dscalar.nii > Name: output_32k_myelin.dscalar.nii > Type: Connectivity - Dense Scalar > Structure: CortexLeft CortexRight > Data Size: 1.43 Megabytes > Maps to Surface: true > Maps to Volume: false > Maps with LabelTable: false > Maps with Palette: true > All Map Palettes Equal: true > Map Interval Units: NIFTI_UNITS_UNKNOWN > > *Number of Maps: 6Number of Rows: 59412* > Number of Columns: 6 > Volume Dim[0]: 0 > Volume Dim[1]: 0 > Volume Dim[2]: 0 > Palette Type: Map (Unique for each map) > > *CIFTI Dim[0]: 6CIFTI Dim[1]: 59412* > ALONG_ROW map type: SCALARS > ALONG_COLUMN map type: BRAIN_MODELS > Has Volume Data: false > CortexLeft: 29696 out of 32492 vertices > CortexRight: 29716 out of 32492 vertices > > But when i run it with palm i get following error: > > Reading input 1/1: output_32k_myelin.dscalar.nii > Reading design matrix and contrasts. > error: The number of rows in the design matrix does > not match the number of observations in the data. > > *- Rows in the matrix: 6- Observations in the data: 59412* > > So my question is there a way to make palm see that subjects are in CIFTI > Dim[0] rather than 1. Alternatively is there any other way to assess > differences? > > > *wb_command. Version: 1.1.1palm. Version: alpha83* > > > > Thank you for your answers in advance. > > 宜しくお願い致します。 > > Sincerely, > Jarek Rokicki, Ph.D. > > Integrative Brain Imaging Center (IBIC) > National Center of Neurology and Psychiatry (NCNP) > > *4-1-1 Ogawahigashi-chyo, Kodaira, Tokyo 187-8551 Japan* > > TEL: +81-80-6628-5709 > > 国立精神・神経医療研究センター > 脳病態統合イメージングセンター(IBIC) > 臨床脳画像研究部 画像情報解析研究室 > *〒187-8551 東京都小平市小川東町4-1-1* > > > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
