Perhaps Anderson can comment more specifically on this error. As I recall some I/O issues with CIFTI in PALM were resolved a while back
Matt. On 4/20/16, 9:39 AM, "[email protected] on behalf of Donna Dierker" <[email protected] on behalf of [email protected]> wrote: >Hi Jarek, > >Using palm's -transposedata is worth trying, but I had to use wb_command >-cifti-separate to peel off left and right hems (or subcortical nifti) >before input to PALM. Maybe that is not needed anymore. > >Donna > > >On Apr 20, 2016, at 4:37 AM, Jarek Rokicki <[email protected]> >wrote: > >> Dear hcp-Experts, >> >> I tried to find if there are significant differences in the myelination >>in two groups of subjects using PALM. Therefore after processing files >>I've merged them using wb_command -cifti-merge >> >> File looks like this: >> wb_command -file-information output_32k_myelin.dscalar.nii >> Name: output_32k_myelin.dscalar.nii >> Type: Connectivity - Dense Scalar >> Structure: CortexLeft CortexRight >> Data Size: 1.43 Megabytes >> Maps to Surface: true >> Maps to Volume: false >> Maps with LabelTable: false >> Maps with Palette: true >> All Map Palettes Equal: true >> Map Interval Units: NIFTI_UNITS_UNKNOWN >> Number of Maps: 6 >> Number of Rows: 59412 >> Number of Columns: 6 >> Volume Dim[0]: 0 >> Volume Dim[1]: 0 >> Volume Dim[2]: 0 >> Palette Type: Map (Unique for each map) >> CIFTI Dim[0]: 6 >> CIFTI Dim[1]: 59412 >> ALONG_ROW map type: SCALARS >> ALONG_COLUMN map type: BRAIN_MODELS >> Has Volume Data: false >> CortexLeft: 29696 out of 32492 vertices >> CortexRight: 29716 out of 32492 vertices >> >> But when i run it with palm i get following error: >> >> Reading input 1/1: output_32k_myelin.dscalar.nii >> Reading design matrix and contrasts. >> error: The number of rows in the design matrix does >> not match the number of observations in the data. >> - Rows in the matrix: 6 >> - Observations in the data: 59412 >> >> So my question is there a way to make palm see that subjects are in >>CIFTI Dim[0] rather than 1. Alternatively is there any other way to >>assess differences? >> >> wb_command. Version: 1.1.1 >> palm. Version: alpha83 >> >> >> >> Thank you for your answers in advance. >> >> 宜しくお願い致します。 >> >> Sincerely, >> Jarek Rokicki, Ph.D. >> >> Integrative Brain Imaging Center (IBIC) >> National Center of Neurology and Psychiatry (NCNP) >> 4-1-1 Ogawahigashi-chyo, Kodaira, >> Tokyo 187-8551 Japan >> >> TEL: +81-80-6628-5709 >> >> 国立精神・神経医療研究センター >> 脳病態統合イメージングセンター(IBIC) >> 臨床脳画像研究部 画像情報解析研究室 >> 〒187-8551 東京都小平市小川東町4-1-1 >> >> >> >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > >_______________________________________________ >HCP-Users mailing list >[email protected] >http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
