You need to adjust your overlay settings; see attached capture. Make sure Threshold Type is set to On.
________________________________ From: [email protected] <[email protected]> on behalf of Dev vasu <[email protected]> Sent: Thursday, July 7, 2016 10:03:28 AM To: Dierker, Donna Cc: <[email protected]> Subject: Re: [HCP-Users] thresholding the data to p-value Dear madam, I don't want to write to an ROI volume, i just want to observe activation levels with a threshold of p<0.05. Thanks Vasudev On 7 July 2016 at 16:31, Dierker, Donna <[email protected]<mailto:[email protected]>> wrote: Hi Vasudev, I'm pretty sure wb_view can display voxels within a range of values (inside upper and lower limit), but I think you mean threshold and write a ROI volume. For that, try: wb_command -metric-math "(x<${Pthresh})" ${PthreshFile} -var x ${PstatFile} Donna ________________________________ From: [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> on behalf of Dev vasu <[email protected]<mailto:[email protected]>> Sent: Wednesday, July 6, 2016 12:04:50 PM To: Harms, Michael; <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] thresholding the data to p-value Dear sir, I would like to threshold my results to a p-value of p<0.05 and i couldn't do it from workbench GUI, I can only threshold the data to percentage changes. Please kindly let me know how i can possibly threshold the results to real p-stats. Thanks Vasudev _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
