Hi HCP experts, When I run FreeSurferPipeLine.sh, I get the previously-mentioned "(standard in) 2: Error: comparison in expression" In /usr/share/fsl/5.0/bin/fsl_sub, from list suggestions, I've tried commenting out
POSIXLY_CORRECT=1 or adding unset POSIXLY_CORRECT The last few lines of recon-all.log are mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz Linux pc053865 4.4.0-31-generic #50-Ubuntu SMP Wed Jul 13 00:07:12 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux recon-all -s MR002 exited with ERRORS at Wed Jul 20 12:06:43 AEST 2016 I'm running Ubuntu 16.04 and the recommended versions of FSL(5.0.9) and FreeSurfer ( freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0-HCP.tar.gz) Any suggestions on a way forward would be greatly appreciated. Thanks Leighton -- Leighton Barnden PhD Imaging Consultant, National Centre for NeuroImmunology and Emerging Diseases, Room 9.19 G40, Griffith University, Parklands Drive, Southport, QLD 4222, Australia _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
