That usually isn’t a fatal error. Are there any other errors? Matt.
From: <[email protected]<mailto:[email protected]>> on behalf of Leighton Barnden <[email protected]<mailto:[email protected]>> Date: Tuesday, July 19, 2016 at 11:18 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Cc: Krusty - Paul Jardine <[email protected]<mailto:[email protected]>>, Zack Shan <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] (standard in) 2: Error: comparison in expression Hi HCP experts, When I run FreeSurferPipeLine.sh, I get the previously-mentioned "(standard in) 2: Error: comparison in expression" In /usr/share/fsl/5.0/bin/fsl_sub, from list suggestions, I've tried commenting out POSIXLY_CORRECT=1 or adding unset POSIXLY_CORRECT The last few lines of recon-all.log are mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz Linux pc053865 4.4.0-31-generic #50-Ubuntu SMP Wed Jul 13 00:07:12 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux recon-all -s MR002 exited with ERRORS at Wed Jul 20 12:06:43 AEST 2016 I'm running Ubuntu 16.04 and the recommended versions of FSL(5.0.9) and FreeSurfer (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0-HCP.tar.gz) Any suggestions on a way forward would be greatly appreciated. Thanks Leighton -- Leighton Barnden PhD Imaging Consultant, National Centre for NeuroImmunology and Emerging Diseases, Room 9.19 G40, Griffith University, Parklands Drive, Southport, QLD 4222, Australia _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
