HCP dense connecomes should have subcortical voxels in them - the cortex is represented on surfaces, so the cortex is not voxelwise (for quite a few reasons). Switch to Volume or All view mode in wb_view and scroll the slice indices to see the subcortical voxels.
Tim On Fri, Aug 5, 2016 at 6:20 PM, Horn,Andreas (BIDMC - Neurology) < [email protected]> wrote: > Dear HCP-Users, > > I am looking for voxel-wise group average (best across S900) connectivity > matrices including subcortical voxels in MNI space. Are such matrices > available somewhere? > I know of the 33GB dense connectome files but as far as I understood – > since they are based on MSM – they don’t include subcortical regions, to > they? > > If such a matrix isn’t available officially from HCP, has someone else > established one to your knowledge? > > Thanks for any hint/suggestion, > > Andy > > -- > Andreas Horn, MD > Laboratory for Brain Network Imaging and Modulation > Berenson-Allen Center for Noninvasive Brain Stimulation > Department for Neurology, Beth Israel Deaconess Center > Harvard Medical School > 330 Brooklin Avenue, Kirstein Building KS 158 > 02215 Boston > > t: +1 6174077649 > w: http://www.brainnetworkstim.com > > > ------------------------------ > > This message is intended for the use of the person(s) to whom it may be > addressed. It may contain information that is privileged, confidential, or > otherwise protected from disclosure under applicable law. If you are not > the intended recipient, any dissemination, distribution, copying, or use of > this information is prohibited. If you have received this message in error, > please permanently delete it and immediately notify the sender. Thank you. > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
