Great, good to know. Btw it would be awesome if you decided to release the templates (also T1/T2) under a completely open (e.g. copyleft) license (i.e. one that can be shared within other software tools like the MNI templates). Especially subcortically, your templates exhibit better contrast than the MNI 2009b NLIN hires atlases. However due to the HCP license, one is not allowed to supply them within a software tool as far as I understand (since all users would need to sign up @connectomeDB).
In any case, awesome work, the whole project! Best, Andy -- Andreas Horn, MD Laboratory for Brain Network Imaging and Modulation Berenson-Allen Center for Noninvasive Brain Stimulation Department for Neurology, Beth Israel Deaconess Center Harvard Medical School 330 Brooklin Avenue, Kirstein Building KS 158 02215 Boston t: +1 6174077649 w: http://www.brainnetworkstim.com Am 06.08.2016 um 09:49 schrieb Glasser, Matthew <[email protected]<mailto:[email protected]>>: That template is not an official HCP brain atlas and we have not released a diffusion-based brain atlas at this time. This is something that we are interested in doing, especially if we can get better cross-subject alignment of the white matter. For now you can certainly make your own atlas based on making FA maps from the diffusion data of each subject and registering them based on the already computed ${StudyFolder}/${Subject}/MNINonLinear/xfms/acpc_dc2standard.nii.gz Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of "Horn,Andreas (BIDMC - Neurology)" <[email protected]<mailto:[email protected]>> Date: Friday, August 5, 2016 at 7:53 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] S900 FA template Dear HCP-users, I wonder if there is an FA template available that has been averaged across all subjects. There is a 488 version displayed here: http://www.iit.edu/~mri/Human_Brain_Templates_and_Atlas.html<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.iit.edu_-7Emri_Human-5FBrain-5FTemplates-5Fand-5FAtlas.html&d=CwMFAg&c=WknmpdNpvrlj2B5K1aWVqL1SOiF30547pqSuOmtwXTQ&r=BTWOP47EynCdRIxIQsxjKLHVp-ucrpC9iMHv26t1NFM&m=0lZzyKwCYNC6gqzcFg_L4ft3YNUz149Qvg6vZpOWsNk&s=9JAd44pZ5f6eUAMAvA-XcPpK8RO80xlElKB_xmbVplc&e=> Is either a 488 or 900 version available for download somewhere? Thanks so much, Andreas -- Andreas Horn, MD Laboratory for Brain Network Imaging and Modulation Berenson-Allen Center for Noninvasive Brain Stimulation Department for Neurology, Beth Israel Deaconess Center Harvard Medical School 330 Brooklin Avenue, Kirstein Building KS 158 02215 Boston t: +1 6174077649 w: http://www.brainnetworkstim.com<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.brainnetworkstim.com&d=CwMFAg&c=WknmpdNpvrlj2B5K1aWVqL1SOiF30547pqSuOmtwXTQ&r=BTWOP47EynCdRIxIQsxjKLHVp-ucrpC9iMHv26t1NFM&m=0lZzyKwCYNC6gqzcFg_L4ft3YNUz149Qvg6vZpOWsNk&s=iBgiTzKHeqlIIdFDhafAXuG6FV77yFtl_YHD_-UphYE&e=> ________________________________ This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, any dissemination, distribution, copying, or use of this information is prohibited. If you have received this message in error, please permanently delete it and immediately notify the sender. Thank you. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users<https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.humanconnectome.org_mailman_listinfo_hcp-2Dusers&d=CwMFAg&c=WknmpdNpvrlj2B5K1aWVqL1SOiF30547pqSuOmtwXTQ&r=BTWOP47EynCdRIxIQsxjKLHVp-ucrpC9iMHv26t1NFM&m=0lZzyKwCYNC6gqzcFg_L4ft3YNUz149Qvg6vZpOWsNk&s=MowNjuiSPmiQRhwUzTamMp_y8KKIeTg_naPt-ZWyaYI&e=> ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
