I agree that looks like a bug. The reason this is here is incase one has an ${fMRIName} that can be analyzed two different ways using different designs ${fsfName}.
Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Andrew Poppe <poppe...@gmail.com<mailto:poppe...@gmail.com>> Date: Tuesday, September 20, 2016 at 11:06 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Possible Typo in task fmri script Hello, I was recently adapting some of your great tfMRI analysis pipeline scripts for use with newly collected HCP-compliant data, and I noticed a line that I can't understand. In TaskfMRIAnalysis.v2.0.sh<http://TaskfMRIAnalysis.v2.0.sh> (called by TaskfMRIAnalysis.sh when "new" FSL versions are detected) on line 126 it says: LevelOnefsfNames=`echo $LevelOnefMRINames | sed 's/ /@/g'` I may be misunderstanding something, so I thought I'd ask, but it seems to me that second variable should be $LevelOnefsfNames. Most likely, it won't cause a problem because by default the two variables are set to be identical in the TaskfMRIAnalysisBatch.sh script. Thanks for any input about this line. Thanks, Andrew Poppe, Ph.D. Postdoctoral Researcher Olin Neuropsychiatry Research Center Institute of Living Hartford Hospital _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users