Making a "nifti version" isn't a simple conversion, as some lengthy conversations on this list have elaborated on.
The good news: if you want a single-subject-specific version, that is possible, using -cifti-separate and -label-to-volume-mapping, using the subject's own surfaces. The bad news: if you want it to be a group atlas, the currently popular volume registration methods aren't good enough at cortical area alignment to make our parcellation meaningful in a group-average volume space, and thus we do not recommend making a volumetric version in such a space. In the meantime, surface registration avoids several difficulties inherent to volume registration, and was instrumental in being able to create the parcellation at all (via alignment of areal features). For more detailed discussion: https://www.mail-archive.com/hcp-users@humanconnectome.org/msg03078.html Tim On Tue, Oct 4, 2016 at 9:47 AM, Elam, Jennifer <e...@wustl.edu> wrote: > Hi Peter, > > The data for the new parcellation are available in the BALSA database, see > this thread: http://www.mail-archive.com/hcp-users@humanconnectome.org/ > msg02876.html > > > We recommend using the included Connectome Workbench scene file to > conveniently view the data in the wb_view part of the software platform. > Get Connectome Workbench here: https://www.humanconnectome. > org/software/get-connectome-workbench.html > > > Many of the files are in the CIFTI data format > <http://www.humanconnectome.org/software/workbench-command.php?function=-cifti-help>, > which has a lot of advantages, but if you need NIFTI versions, you can use > wb_command <http://www.humanconnectome.org/software/workbench-command.php> > (distributed as part of Connectome Workbench) to do the conversion. > > > There's lots of help for using wb_command in the HCP-Users mail archive, > and/or you could post more questions to the list. > > > Best, > > Jenn > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School of Medicine > Department of Neuroscience, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > e...@wustl.edu > www.humanconnectome.org > > ------------------------------ > *From:* hcp-users-boun...@humanconnectome.org <hcp-users-bounces@ > humanconnectome.org> on behalf of Peter McColgan <pmccolga...@qub.ac.uk> > *Sent:* Tuesday, October 4, 2016 9:29:30 AM > *To:* hcp-users@humanconnectome.org > *Subject:* [HCP-Users] Glasser nature atlas > > > > Dear HCP team, > > > Is it possible to download a nifti version of the Glasser atlas featured > recently in nature? > > > Thanks > > > bw > > > Peter > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
