http://www.humanconnectome.org/software/workbench-command.php?function=-gifti-all-labels-to-rois
http://www.humanconnectome.org/software/workbench-command.php?function=-metric-merge You'll need to run -metric-merge once for each roi to get them all as separate files, wb_command doesn't generate hundreds of files from a simple command. Tim On Mon, Oct 24, 2016 at 3:33 PM, Gopalakrishnan, Karthik < [email protected]> wrote: > Thanks Matt! > > > > So after using wb_command -cifti-separate on the .dlabel.nii file > containing the MMP-1.0 parcellation for the hemisphere, we have a > .label.gii file representing the 180 ROIs in the corresponding hemisphere. > > > > Can someone point out how we could go from this .label.gii file to 180 > separate .gii files representing each ROI so that we can run probtrackx > with these ROIs for a given subject? We want to be able to run probtrackx > using each of the 180 ROIs as seeds to all 180 possible targets. > > > > Thanks, > > Karthik > > > > *From:* Glasser, Matthew [mailto:[email protected]] > *Sent:* Friday, October 21, 2016 4:14 PM > *To:* Gopalakrishnan, Karthik <[email protected]>; > [email protected] > *Subject:* Re: [HCP-Users] Converting MMP-1.0 180 ROIs dlabel.nii file to > surf.gii > > > > You can convert the CIFTI file to a GIFTI label file using wb_command > -cifti-separate. As for going from GIFTI label to surf+label (probtrackx’s > interpretation of GIFTI), you’ll need to use the label2surf. Hopefully > either one of the oxford folks can explain how to use that here or on the > FSL list. > > > > Peace, > > > > Matt. > > > > *From: *<[email protected]> on behalf of > "Gopalakrishnan, Karthik" <[email protected]> > *Date: *Friday, October 21, 2016 at 2:12 PM > *To: *"[email protected]" <[email protected]> > *Subject: *[HCP-Users] Converting MMP-1.0 180 ROIs dlabel.nii file to > surf.gii > > > > Hi all, > > > > How do we convert a dlabel.nii file containing 180 ROIs > (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) > to a surf.gii file? We want to do that such that the output ROIs can be > used in probtracx. > > > > Thanks! > > > > Regards, > > Karthik > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
