As I replied to your other email, using wb_command -cifti-separate will generate GIFTI label files from a CIFTI dlabel file:
http://www.humanconnectome.org/software/workbench-command.php?function=-cifti-separate Please read the help information of commands thoroughly, there are additional arguments you need to supply to -label-to-volume-mapping: http://www.humanconnectome.org/software/workbench-command.php?function=-label-to-volume-mapping Tim On Tue, Nov 1, 2016 at 6:06 AM, Enrico Schulz <[email protected]> wrote: > Dear HCP community, > > I'm sorry, I posted my question to the wrong list before... So, again... > > I want to apply the recent brain parcellation (Glasser, Nature) to my DTI > data. In order to do tractography I need to generate 3D masks in standard > space from the label file. > As far as I understand I could use the following command: > > *wb_command -label-to-volume-mapping XYZ MNI152_T1_2mm_brain.nii.gz > out.nii.gz* > > This command apparently needs a gifti label file (XYZ) that I do not > have. Is there another way to get 3D masks or where would I find the gifti > label file? > > I am aware that the group masks based on surface definitions are not fully > accurate. > Thank you, > Enrico > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
