We also don't support the use of this parcellation in 3D volume standard space as 3D volume standard spaces are not very accurate in their cortical registration across subjects. We gave you some instructions on how to bring the parcellation into an individual subject's volume space, which is supported.
Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Timothy Coalson <[email protected]<mailto:[email protected]>> Date: Tuesday, November 1, 2016 at 2:55 PM To: Enrico Schulz <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] surface label to 3D mask #2 As I replied to your other email, using wb_command -cifti-separate will generate GIFTI label files from a CIFTI dlabel file: http://www.humanconnectome.org/software/workbench-command.php?function=-cifti-separate Please read the help information of commands thoroughly, there are additional arguments you need to supply to -label-to-volume-mapping: http://www.humanconnectome.org/software/workbench-command.php?function=-label-to-volume-mapping Tim On Tue, Nov 1, 2016 at 6:06 AM, Enrico Schulz <[email protected]<mailto:[email protected]>> wrote: Dear HCP community, I'm sorry, I posted my question to the wrong list before... So, again... I want to apply the recent brain parcellation (Glasser, Nature) to my DTI data. In order to do tractography I need to generate 3D masks in standard space from the label file. As far as I understand I could use the following command: wb_command -label-to-volume-mapping XYZ MNI152_T1_2mm_brain.nii.gz out.nii.gz This command apparently needs a gifti label file (XYZ) that I do not have. Is there another way to get 3D masks or where would I find the gifti label file? I am aware that the group masks based on surface definitions are not fully accurate. Thank you, Enrico _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
