Dear HCP Experts, We are applying the hcp_fix pipeline on Prisma-acquired data (according to the Life Span protocol) and it completed without errors (although it took significant effort on installing the proper R packages). Nonetheless, we cannot find the resulting files that are labelled "clean" anywhere despite the lack of errors. The closest time series we see are the rfMRI_REST1_PA_hp2000.nii and rfMRI_REST1_PA_Atlas.dtseries.nii. Are those overwritten to reflect the results after completing the whole hcp_fix procedure?
Second question, say we get the cleaned time series, and we use the wb_command to generate the Correlation (connectivity) maps, how can we add the time series and connectivity maps to the existing "spec" files (for example subjectIDr.32k_fs_LR.wb) so that we can evaluate myelin maps along the connectivity maps? We used the wb_command -add-to-spec-file option but the correlation maps didn't show any intensities on wb_view. Thanks. Osama Osama Abdullah, PhD Department of Neurology School of Medicine University of Utah 36 S. Wasatch Drive Salt Lake City, UT 84112 _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
