If this is with FSL’s GUI, you might need to ask about it on the FSL list.
Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Xinyang Liu <xinyang_ie...@163.com<mailto:xinyang_ie...@163.com>> Date: Monday, August 28, 2017 at 9:27 PM To: "HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>" <HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>> Subject: [HCP-Users] failed running preprocessed dMRI data with FSL dtifit Dear HCP fellows, Hi. Could I ask for some help? When I ran the HCP preprocessed diffusion data with the "dtifit" function in FSL, it always failed in the middle with a window came out saying "signal killed", which is strange. I then used another software called PANDA to check the detailed procedure, and found that the processing stopped at "extract B0", the log informations are as follows: ******************* The job starts now ! ******************** fslroi /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/test100206_00004_DWI_01.nii.gz /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/data_b0.nii.gz 0 1 Killed fslroi /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/test100206_00004_DWI_01.nii.gz /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/data_b0.nii.gz 0 1: Killed extracting b0 volume is done! **************** Checking outputs **************** The output file or directory /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/data_b0.nii.gz has not been generated! The output file or directory /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/OutputDone/extractB0_00004.done was successfully generated! Could you suggest possible reasons of how this happened? Thanks a lot! Best regards, Xinyang Liu _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
