Ok, thanks a lot for the information. We will surely use the command line after starting with the GUI as a new learner. ;)
Best regards, Xinyang At 2017-08-29 11:07:50, "Glasser, Matthew" <glass...@wustl.edu> wrote: The reason I suggest the FSL list is that I don’t think those of us who answer questions on this list know much about the FSL GUIs. We generally are more knowledgable about the FSL command line. Peace, Matt. From: Xinyang Liu <xinyang_ie...@163.com> Date: Monday, August 28, 2017 at 10:04 PM To: Matt Glasser <glass...@wustl.edu> Cc: "HCP-Users@humanconnectome.org" <HCP-Users@humanconnectome.org> Subject: Re: [HCP-Users] failed running preprocessed dMRI data with FSL dtifit Dear Matthew, Oh, I just found out the reason, which is due to the very limited internal storage of my virtual machine. Now it runs very well after I enlarged it. :) Thanks a lot for your suggestion about the FSL list, which provides a new way to me when I have FSL running problems in the future. Best regards, Xinyang At 2017-08-29 10:29:57, "Glasser, Matthew" <glass...@wustl.edu> wrote: If this is with FSL’s GUI, you might need to ask about it on the FSL list. Peace, Matt. From: <hcp-users-boun...@humanconnectome.org> on behalf of Xinyang Liu <xinyang_ie...@163.com> Date: Monday, August 28, 2017 at 9:27 PM To: "HCP-Users@humanconnectome.org" <HCP-Users@humanconnectome.org> Subject: [HCP-Users] failed running preprocessed dMRI data with FSL dtifit Dear HCP fellows, Hi. Could I ask for some help? When I ran the HCP preprocessed diffusion data with the "dtifit" function in FSL, it always failed in the middle with a window came out saying "signal killed", which is strange. I then used another software called PANDA to check the detailed procedure, and found that the processing stopped at "extract B0", the log informations are as follows: ******************* The job starts now ! ******************** fslroi /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/test100206_00004_DWI_01.nii.gz /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/data_b0.nii.gz 0 1 Killed fslroi /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/test100206_00004_DWI_01.nii.gz /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/data_b0.nii.gz 0 1: Killed extracting b0 volume is done! **************** Checking outputs **************** The output file or directory /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/data_b0.nii.gz has not been generated! The output file or directory /home/panda/ShareFolder/HCPDATA/output4_sub2/00004/tmp/OutputDone/extractB0_00004.done was successfully generated! Could you suggest possible reasons of how this happened? Thanks a lot! Best regards, Xinyang Liu _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
