Sure you can spline interpolate it back using applywarp --interp=spline and
--warp=${StudyFolder}/${Subject}/MNINonLinear/xfms/standard2acpc_dc.nii.gz.
The two spline interpolations will induce a very small amount of smoothing, but
it is a lot less than with things like trilinear interpolation. You will also
need to create a reference volume at 2mm in T1w space, and you can do this with
flirt -interp spline --applyisoxfm 2.0 (e.g. on the T1w image).
Peace,
Matt.
From:
<[email protected]<mailto:[email protected]>>
on behalf of Javier Rasero Daparte
<[email protected]<mailto:[email protected]>>
Date: Friday, September 22, 2017 at 5:15 PM
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] rfMRI Volume time series in T1 space
Dear hcp-users,
Is there any quick way (i.e. without having to re-run a modified version of
fmri pipeline) of transforming the available rfMRI time series in MNI space
back to T1 space while keeping the same resolution?
Many thanks in advance for the help!
Javier
_______________________________________________
HCP-Users mailing list
[email protected]<mailto:[email protected]>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
_______________________________________________
HCP-Users mailing list
[email protected]
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
