Dear Michael and Matt, Thank you very much for your reply. As for Michael's question - yes, I am looking for a dlabel file that includes volumes such as caudate and putamen as separate structures. Perhaps there is a workbench command that would allow to isolate these structures in a random MNINonLinear dscalar file? I have been exploring -cifti-restrict-dense-map and -cifti-create-dense-scalar but have not figured it out. I have also tried using python's nibabel and numpy tools to isolate the rows corresponding to each structure, but this seems to be a much more complicated route.
Thank you very much for your help, Xavier. ________________________________ From: Harms, Michael [[email protected]] Sent: Tuesday, November 21, 2017 7:29 PM To: Xavier Guell Paradis; [email protected] Subject: Re: [HCP-Users] Subcortical atlas of S900_AverageT1w_restore.nii.gz? Hi, The subcortical structures are already defined in the standard CIFTI space. Are you just looking for a dlabel file that includes those subcortical labels? Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected] From: <[email protected]> on behalf of Xavier Guell Paradis <[email protected]> Date: Tuesday, November 21, 2017 at 5:23 PM To: "[email protected]" <[email protected]> Subject: [HCP-Users] Subcortical atlas of S900_AverageT1w_restore.nii.gz? Dear HCP experts, I was wondering if there is a publicly available, basic subcortical parcellation (deliniating structures such as caudate and putamen) of the standard volume structural file of HCP (such as S900_AverageT1w_restore.nii.gz). Restated, is there a parcellation that deliniates structures such as caudate and putamen in S900_AverageT1w_restore.nii.gz? Thank you very much, Xavier. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
