That doesn¹t make a lot of sense.  How much RAM do you have?
PreFreeSurfer should be pretty deterministic as far as run time goes.  If
you try again does this persist?

Peace,

Matt.

On 11/30/17, 2:51 PM, "[email protected] on behalf of
Ricardo Valle" <[email protected] on behalf of
[email protected]> wrote:

>Hi all!
>
>I recently ran the HCP pipeline on two HCP subjects (100307 and 103818)
>and found that the time it took to run them was dramatically different.
>To illustrate, Prefreesurfer took about 2 hours in one case and about 36
>hours in the other.
>
>The only cause I can think of for this difference is the following: for
>subject 100307, I downloaded one set of T1 (and accompanying, e.g. AFI,
>BIAS, etc.) images and one set of T2 images; for subject 103818, I
>downloaded both sets of T1 and both sets of T2 images. Do you think this
>might indeed be the cause of such a large running time difference? If so,
>why is this?
>
>Thank you,
>All the best,
>Ruy
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