Dear  all ,

I am using PALM in order to perform  Two sample Unpaired T test for my
group study  .

I followed the instructions provided in  PALM examples working with CIFTI
files.

 When i am running the palm  i am incurring following error


1. palm -i L_IX_AB_sub.nii  -d design.mat -t design.con -o AB_sub -T -logp


" Reading input 1/1: L_IX_AB_sub.nii
Undefined function or variable 'Y'.

Error in palm_ready (line 141)
    ynan = any(isnan(Y),1);

Error in palm_takeargs (line 1599)
        palm_ready(opts.i{i},maskstruct,opts,true);

Error in palm_core (line 33)
[opts,plm] = palm_takeargs(varargin{:});

Error in palm (line 81)
palm_core(varargin{:});
"

2. palm -i -i L_IX_L_AB.func.gii  -d design.mat -t design.con -o AB_L -T
-tfce2D -s L_midthickness_AB.func.gii  L_area_AB.func.gii  -logp


" Found SPM in /home/vasudev/Documents/spm12
Found HCP Workbench executable in /usr/bin/wb_command
Loading surface 1/1: L_midthickness_AB.func.gii
Reading input 1/1: L_IX_L_AB.func.gii
Struct contents reference from a non-struct array object.

Error in palm_takeargs (line 1633)
            if any(size(plm.srf{s}.data.vtx,1) == ...

Error in palm_core (line 33)
[opts,plm] = palm_takeargs(varargin{:});

Error in palm (line 81)
palm_core(varargin{:});


Is there any reason why i am experiencing these error, why is it PALM
unable to read Input files  ?.

Thanks
Vasudev

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