Dear Experts:
I’m running MSMAllPipeline on our data acquired with protocol similar to HCP.
After finishing ICA+FIX pipeline, I’ve run MSMAllPipeline on those data.
Although most of subjects are successfully finished for MSMAllPipeline, some
subjects showed error message as below:
Error using svd
Input to SVD must not contain NaN or Inf.
Error in pinv (line 18)
[U,S,V] = svd(A,'econ');
Error in MSMregression (line 124)
NODEts=demean((pinv(demean(GM.*DesignWeights)) *
(demean(BO.cdata).*DenseWeights))');
While running:
/Applications/workbench/bin_macosx64/../macosx64_apps/wb_command.app/Contents/MacOS/wb_command
-cifti-resample
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii
COLUMN
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii
COLUMN ADAP_BARY_AREA ENCLOSING_VOXEL
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii
-surface-postdilate 40 -left-spheres
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.sphere.MSMSulc.32k_fs_LR.surf.gii
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.sphere.32k_fs_LR.surf.gii
-left-area-surfs
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.midthickness.32k_fs_LR.surf.gii
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.midthickness.32k_fs_LR.surf.gii
-right-spheres
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.sphere.MSMSulc.32k_fs_LR.surf.gii
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.sphere.32k_fs_LR.surf.gii
-right-area-surfs
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.midthickness.32k_fs_LR.surf.gii
/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.midthickness.32k_fs_LR.surf.gii
ERROR: failed to open file
'/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii',
file does not exist, or folder permissions prevent seeing it
Given the error message showed, I think I need to fix the data containing NaN
or Inf.
Could you please help me fix this problem?
Thanks.
Sang-Young
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