I would look in your data for any grayordinates with std(tcs)=0. These would need to be removed and time varying data added (e.g. by dilation).
Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Sang-Young Kim <[email protected]<mailto:[email protected]>> Date: Tuesday, January 9, 2018 at 10:03 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] MSMAllPipeline Dear Experts: I’m running MSMAllPipeline on our data acquired with protocol similar to HCP. After finishing ICA+FIX pipeline, I’ve run MSMAllPipeline on those data. Although most of subjects are successfully finished for MSMAllPipeline, some subjects showed error message as below: Error using svd Input to SVD must not contain NaN or Inf. Error in pinv (line 18) [U,S,V] = svd(A,'econ'); Error in MSMregression (line 124) NODEts=demean((pinv(demean(GM.*DesignWeights)) * (demean(BO.cdata).*DenseWeights))'); While running: /Applications/workbench/bin_macosx64/../macosx64_apps/wb_command.app/Contents/MacOS/wb_command -cifti-resample /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii COLUMN /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii COLUMN ADAP_BARY_AREA ENCLOSING_VOXEL /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii -surface-postdilate 40 -left-spheres /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.sphere.MSMSulc.32k_fs_LR.surf.gii /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.sphere.32k_fs_LR.surf.gii -left-area-surfs /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.midthickness.32k_fs_LR.surf.gii /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.L.midthickness.32k_fs_LR.surf.gii -right-spheres /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.sphere.MSMSulc.32k_fs_LR.surf.gii /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.sphere.32k_fs_LR.surf.gii -right-area-surfs /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.midthickness.32k_fs_LR.surf.gii /Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.R.midthickness.32k_fs_LR.surf.gii ERROR: failed to open file '/Volumes/easystore/projects/HIV/33038/MNINonLinear/fsaverage_LR32k/33038.individual_RSNs_d40_MSMSulc.32k_fs_LR.dscalar.nii', file does not exist, or folder permissions prevent seeing it Given the error message showed, I think I need to fix the data containing NaN or Inf. Could you please help me fix this problem? Thanks. Sang-Young _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
