Does that subject have NIFTIs and CIFTIs for that scan? As for ICA AROMA, I would recommend instead running the multi-run ICA+FIX pipeline on the task fMRI scans. This should preform a bit better than ICA AROMA, as we got comparable classifier performance to ICA+FIX in the resting state scans when combining across task runs (and multi-run ICA+FIX clearly improves task fMRI statistics where single run ICA+FIX was more equivocal). See:
https://www.biorxiv.org/content/early/2017/12/13/193862 Figure 5 and page 3 of the main supplemental information. Script is here: https://github.com/Washington-University/Pipelines/tree/master/ICAFIX We hope to run this on all the HCP task fMRI data at some point, but there are many priorities and few resources… Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Michelle Chiu <[email protected]<mailto:[email protected]>> Date: Tuesday, January 30, 2018 at 2:07 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] missing movement_regressors.txt file I'm trying to run ICA_AROMA on subjects in the HCP through AWS but I'm getting the following error back informing me there is no such file or directory (for a few subject numbers) for the following: /s3/hcp/126426/MNINonLinear/Results/tfMRI_GAMBLING_RL/Movement_Regressors.txt I see on Connectomedb that there is indeed 3T data for the "missing" subjects, although these subject folders appear to be missing in the s3/hcp folder I've mounted. Please advise, thanks! _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
