Thank you Matt and Jenn! We'd heard about the ICA-FIX pipeline and are very excited to give it a test run!
Best, Michelle On Tue, Jan 30, 2018 at 3:27 PM, Glasser, Matthew <[email protected]> wrote: > Does that subject have NIFTIs and CIFTIs for that scan? > > As for ICA AROMA, I would recommend instead running the multi-run ICA+FIX > pipeline on the task fMRI scans. This should preform a bit better than ICA > AROMA, as we got comparable classifier performance to ICA+FIX in the > resting state scans when combining across task runs (and multi-run ICA+FIX > clearly improves task fMRI statistics where single run ICA+FIX was more > equivocal). See: > > https://www.biorxiv.org/content/early/2017/12/13/193862 Figure 5 and page > 3 of the main supplemental information. > > Script is here: > > https://github.com/Washington-University/Pipelines/tree/master/ICAFIX > > We hope to run this on all the HCP task fMRI data at some point, but there > are many priorities and few resources… > > Peace, > > Matt. > > From: <[email protected]> on behalf of Michelle Chiu < > [email protected]> > Date: Tuesday, January 30, 2018 at 2:07 PM > To: "[email protected]" <[email protected]> > Subject: [HCP-Users] missing movement_regressors.txt file > > I'm trying to run ICA_AROMA on subjects in the HCP through AWS but I'm > getting the following error back informing me there is no such file or > directory (for a few subject numbers) for the following: > > /s3/hcp/126426/MNINonLinear/Results/tfMRI_GAMBLING_RL/ > Movement_Regressors.txt > > I see on Connectomedb that there is indeed 3T data for the "missing" > subjects, although these subject folders appear to be missing in the s3/hcp > folder I've mounted. Please advise, thanks! > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
