Hi Michael Many thanks. Not really but maybe space and not knowing how to combining them all easily and using a script to do this. Probably because most of the data I used before was just AP so I was wondering whether really. I need to do this. Also because of space and finding an automated way to combine all data for all subjects.
Thanks Aser On Mon, Mar 26, 2018 at 5:09 PM, Harms, Michael <mha...@wustl.edu> wrote: > > > Hi, > > “AP” (short for anterior-to-posterior) and “PA” (short for > posterior-to-anterior) refer to the phase encoding direction. > > In general, as Jenn said, we recommend using both the AP and PA data, so > that your results aren’t “biased” toward a particular phase-encoding > direction. > > > > Is there a particular reason that you only want to use a single “AP” run? > > > > Cheers, > > -MH > > > > -- > > Michael Harms, Ph.D. > > ----------------------------------------------------------- > > Associate Professor of Psychiatry > > Washington University School of Medicine > > Department of Psychiatry, Box 8134 > > 660 South Euclid Ave > <https://maps.google.com/?q=660+South+Euclid+Ave&entry=gmail&source=g>. > Tel: 314-747-6173 <(314)%20747-6173> > > St. Louis, MO 63110 Email: mha...@wustl.edu > > > > *From: *<hcp-users-boun...@humanconnectome.org> on behalf of Laserboy > 1122233 <fmri2...@gmail.com> > *Date: *Monday, March 26, 2018 at 10:57 AM > *To: *"Elam, Jennifer" <e...@wustl.edu> > *Cc: *"hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > *Subject: *Re: [HCP-Users] Fwd: analysing the 7T rsfMRI > > > > Dear Jenn and all, > > > > Many thanks for your email and replay. Is the AP the fold direction? or > what is it exactly? May I ask if I analyze the data with AP flold direction > is this acceptable? I have used and downloaded other free data (e.g. the > fcon 1000) but all what I analysed before where one nifit file and never > seen such rsfMRI. So how much will this be going to affect the data > analysis? and whether it is a big problem? > > > > Many thanks > > > > Aser > > > > On Mon, Mar 26, 2018 at 4:25 PM, Elam, Jennifer <e...@wustl.edu> wrote: > > Hi Aser, > > First off, if you have 7T preprocessed rfMRI data that we > previously released, do not use it. There was a processing error that we > have now fixed and are preparing to rerelease the corrected > preprocessed data in the next couple of weeks. > > If you are processing the unprocessed 7T data yourself, we recommend > analyzing the runs in AP/PA pairs, or using all 4 runs. Advice on demeaning > and normalizing the timeseries and then concatenating the runs is on the > HCP-Users > FAQ wikipage > <https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-3.IseethatHCPdistributesgroupaveragedenseconnectomefiles.Doyoualsoprovideconnectivitymatricesforindividualsubjects?> > . > > > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School of Medicine > Department of Neuroscience, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > e...@wustl.edu > www.humanconnectome.org > > > ------------------------------ > > *From:* hcp-users-boun...@humanconnectome.org <hcp-users-bounces@ > humanconnectome.org> on behalf of Laserboy 1122233 <fmri2...@gmail.com> > *Sent:* Monday, March 26, 2018 10:15:39 AM > *To:* hcp-users@humanconnectome.org > *Subject:* [HCP-Users] Fwd: analysing the 7T rsfMRI > > > > Hello > > > > I am new to the data and apologies if this is a naive question. > > > > All of the data contain or acquired with AP and or PA. If I would like to > use for example conn to analyse the data can I just analyse rest 1 (PA) or > it has to be both? If both how can I combine them or proceed ? > > > > Many thanks > > > > Aser > > > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
